Identification Of Species Research Articles

Species distribution and antimicrobial susceptibility of Burkholderia cepacia complex isolates in clinical infections: Experience from a tertiary care hospital, Southern India

PurposeBurkholderia cepacia complex (Bcc) is a diverse group of environmental bacteria associated with opportunistic infections. The identification of Bcc using conventional methods poses challenges. Bcc infections are difficult to treat due to intrinsic antibiotic resistance. The study aimed to investigate the species distribution and antimicrobial susceptibility of clinical Bcc isolates. MethodsA total of 153 Bcc isolates obtained from clinical samples were analysed. Species identification was carried out using automated methods, including MALDI-TOF MS and VITEK2. Antimicrobial susceptibility testing was performed using the disc diffusion method. ResultsBurkholderia cenocepacia (70.5%) emerged as the most prevalent species, followed by Burkholderia contaminans (9.8%) and Burkholderia cepacia (7.2%). Ventilator-associated pneumonia (38.6%) was the most common infection, followed by sepsis (28.1%). Co-existence of Bcc with other pathogens in many cases suggested potential co-infection scenarios. Antimicrobial susceptibility revealed that ceftazidime, co-trimoxazole and meropenem were the most effective drugs, while levofloxacin proved to be the least effective. Moderate susceptibility was noted to minocycline, with 4.6% of isolates exhibiting multi-drug resistance. ConclusionThis study provides valuable insights into the prevalence, clinical associations, and antibiotic susceptibility of Bcc in India. It highlights the importance of Bcc as a nosocomial pathogen, especially in vulnerable patient populations. The findings contribute to understanding Bcc infections, their distribution, and emphasize the necessity for accurate identification methods in clinical settings.

Identification and Characterization of Colletotrichum Species Associated with Anthracnose Disease of Plum.

Plum (Prunus salicina Lindl.) is commercially cultivated worldwide for the high levels of nutrients in the fruit. In recent years, anthracnose has been severe in some plum planting areas in China, resulting in a large number of necrotic leaves, blight and pre-mature leaf fall. In this study, anthracnose samples of plum leaves were collected from Hezhou, Guilin and Lipu, Guangxi Province, and Meishan city, Abe Tibetan and Qiang autonomous prefecture of Sichuan Province. Characteristics of mycelia on PDA, morphology of appressoria and conidia, and analysis of sequences of several marker regions (internal transcribed spacer [ITS] region, glyceraldehyde-3-phosphate dehydrogenase [GAPDH], chitin synthase [CHS-1], histone H3 [HIS3], actin [ACT], β-tubulin [TUB2], and the intergenic region between apn2 and MAT1-2-1 [ApMat]). The resulting 101 Colletotrichum isolates obtained were identified as eight species: C. fructicola (50.5%), C. siamense (24.8%), C. karsti (8.9%), C. plurivorum (7.9%), C. aeschynomenes (3.9%), C. gloeosporioides (2%), C. celtidis (1%) and C. phyllanthi (1%). Representatives of all eight Colletotrichum species were found to cause disease on wounded leaves of plum seedlings in pathogenicity assays. As far as we are aware, this is the first report of anthracnose of plum caused by C. celtidis and C. phyllanthi in China.

Optofluidic Force Induction Meets Raman Spectroscopy and Inductively Coupled Plasma-Mass Spectrometry: A New Hyphenated Technique for Comprehensive and Complementary Characterizations of Single Particles.

Nanoparticles are produced at accelerating rates, are increasingly integrated into scientific and industrial applications, and are widely discharged into the environment. Analytical techniques are required to characterize parameters such as particle number concentrations, mass and size distributions, molecular and elemental compositions, and particle stability. This is not only relevant to investigate their utility for various industrial or medical applications and for controlling the manufacturing processes but also to assess toxicity and environmental fate. Different analytical strategies aim to characterize certain facets of particles but are difficult to combine to retrieve relevant parameters coherently and to provide a more comprehensive picture. In this work, we demonstrate the first online hyphenation of optofluidic force induction (OF2i) with Raman spectroscopy and inductively coupled plasma-time-of-flight-mass spectrometry (ICP-TOFMS) to harness their complementary technology-specific advantages and to promote comprehensive particle characterizations. We optically trapped individual particles on a weakly focused vortex laser beam by aligning a microfluidic flow antiparallelly to the laser propagation direction. The position of particles in this optical trap depended on the hydrodynamic diameter and therefore enabled size calibration as well as matrix elimination. Additionally, laser light scattered on particles was analyzed in a single particle (SP) Raman spectroscopy setup for the identification of particulate species and phases. Finally, particles were characterized regarding elemental composition and their distributions in mass and size using SP ICP-TOFMS. In a proof of concept, we analyzed polystyrene-based microplastic and TiO2 nanoparticles and demonstrated the opportunities provided through the coupling of OF2i with SP Raman and SP ICP-TOFMS.

The State of Knowledge of CCA Diversity in the Caribbean Coral Reefs

Crustose coralline algae (CCA) are a diverse and ecologically important species found in most of the world’s oceans. The current lack of taxonomic knowledge and relative abundance compromises our ability to predict species diversity numbers and, thus, their ecological roles and impacts on coral reefs. To gather a better understanding of the state of knowledge of crustose coralline algae taxonomy in the Caribbean, 107 different research papers, and other primary and secondary literature were studied; any source with taxonomical information, species identification, or genetic markers for identification was recorded. All Genebank codes were collected and sorted by supposed species marker and then ran through the National Center of Biotechnology Information. The location these genetic markers were gathered from was compared to the natural habitat range of the species, based on the Algaebank habitat description. Of the supposed 83 described species of crustose algae in the Caribbean, based on morphological characteristics, only 24 total were confirmed by DNA markers. This leaves at least 59 species of CCA to be confirmed in the Caribbean Sea with molecular markers. This indicates the importance of DNA barcode survey studies to assess the accurate diversity of this group in the region. With this limited knowledge apparent, it should be seen that a CCAs phylogenetic and taxonomical review must be done. An in-depth assessment should be conducted on CCA collections to identify the Caribbean species correctly and thus know their biodiversity in local habitats.

Exploring the Interplay between Tribocorrosion and Surface Chemistry of the ASTM F139 Surgical Stainless Steel in Phosphate-Buffered Saline Solution

Surgical ASTM F139 stainless steel is used for temporary fixtures in the biomedical field. Tribocorrosion is a major concern in this application. The aim of the present work was to study the interplay between tribocorrosion behavior and the surface chemistry of the ASTM F139 stainless steel in phosphate-buffered saline solution (PBS). Sliding wear tests were conducted against alumina balls at different electrochemical potentials: open circuit potential (OCP), cathodic potential (−100 mV versus the OCP), and anodic potentials (+200 mVAg/AgCl and +700 mVAg/AgCl). The normal load was 20 N. The wear volume was estimated based on micrographs obtained from the wear tracks using confocal laser scanning microscopy. Moreover, the wear tracks were also examined by scanning electron microscopy (SEM). The surface chemistry of the ASTM F139 specimens was analyzed by X-ray photoelectron spectroscopy (XPS). The wear volume was dependent on the electrochemical potential, being maximized at +700 mVAg/AgCl. Delamination areas and grooves were observed in the wear tracks. Detailed assessment of the surface chemistry inside the wear tracks allowed identification of the main chemical species and their relative quantities, thus enabling correlation of the passive film composition with the observed tribocorrosion behavior.

Universiti Sains Malaysia Campus Nature Challenge: A Collaborative Citizen Science Initiative For Biodiversity Conservation And Environmental Awareness

Considering the growing global biodiversity crisis, citizen science initiatives have emerged as powerful tools for long-term ecological data collection involving non-experts in research. “USM Campus Nature Challenge”, a collaborative effort led by the USM Library in partnership with the School of Biological Sciences and the Centre for Global Sustainability Studies, aimed to create awareness about ecological concerns and biodiversity conservation within the university community by documenting biodiversity at USM’s main campus. Methodologically, the project organized a 6-week ‘bio blitz’ event open to citizen scientists to explore the flora and fauna of USM’s diverse campus habitats while cataloging species through the iNaturalist app. The results revealed that plant species dominated the observations, constituting 64.9% of recorded biodiversity and reflecting the rich botanical diversity on the USM campus. Further observations included insects (10.4%), fungi (7.6%), birds (6.3%), and various other species, underscoring the complexity of the ecological web of the campus. An evaluation of data quality revealed that 36.6% of the species identifications were categorized as “Research Grade”, 47.8% were designated as needing further identification, and 15.7% were graded as “casual”. In conclusion, the project leveraged the approach to create more public awareness about local ecological concerns and to strengthen the University community’s connection to nature. This USM Library’s pilot initiative closely aligns with the Open Science movement related to citizen science in Malaysia.

Molecular Detection and Characterization of Hemotropic Mycoplasma in Assamese Macaques (Macaca assamensis) of Northern Thailand

Hemotropic mycoplasmas, also known as hemoplasmas, are parasitic bacteria that infect red blood cells, potentially leading to varying degrees of anemia across numerous mammalian species, including nonhuman primates. The present study aims to investigate the prevalence of hemoplasma infection and identify the species involved among free-ranging Assamese macaques (Macaca assamensis) inhabiting northern Thailand. A total of 133 blood samples were collected from Assamese macaques in Chiang Rai province, Thailand, and subjected to screening for hemoplasma infection utilizing nested PCR amplification targeting the 16S rRNA gene. Positive samples were subsequently analyzed through nucleotide sequencing and phylogenetic analysis for putative species identification. Current study results revealed that 17.3% (23/133; 95% CI 11.29-24.81) of Assamese macaques tested positive for hemoplasma infection using the nested PCR assay. Partial 16S rRNA sequences derived from hemoplasma isolates in Assamese macaques exhibited 99% homology, forming a cluster within the same phylogenetic clade as “Candidatus Mycoplasma haematomacacae,” previously identified in long-tailed macaques, rhesus macaques, and Japanese macaques. These findings suggest the presence of “Ca. M. haematomacacae” not only in long-tailed macaques and rhesus macaques but also in Assamese macaques in Thailand. To our knowledge, this marks the first molecular detection of “Ca. M. haematomacacae” in Assamese macaques in Thailand. These results hold significance as they enhance our understanding of hemoplasma infection distribution among macaque populations in Thailand.

A DNA barcode reference library of Croatian mosquitoes (Diptera: Culicidae): implications for identification and delimitation of species, with notes on the distribution of potential vector species

BackgroundMosquitoes pose a risk to human health worldwide, and correct species identification and detection of cryptic species are the most important keys for surveillance and control of mosquito vectors. In addition to traditional identification based on morphology, DNA barcoding has recently been widely used as a complementary tool for reliable identification of mosquito species. The main objective of this study was to create a reference DNA barcode library for the Croatian mosquito fauna, which should contribute to more accurate and faster identification of species, including cryptic species, and recognition of relevant vector species.MethodsSampling was carried out in three biogeographical regions of Croatia over six years (2017–2022). The mosquitoes were morphologically identified; molecular identification was based on the standard barcoding region of the mitochondrial COI gene and the nuclear ITS2 region, the latter to identify species within the Anopheles maculipennis complex. The BIN-RESL algorithm assigned the COI sequences to the corresponding BINs (Barcode Index Number clusters) in BOLD, i.e. to putative MOTUs (Molecular Operational Taxonomic Units). The bPTP and ASAP species delimitation methods were applied to the genus datasets in order to verify/confirm the assignment of specimens to specific MOTUs.ResultsA total of 405 mosquito specimens belonging to six genera and 30 morphospecies were collected and processed. Species delimitation methods assigned the samples to 31 (BIN-RESL), 30 (bPTP) and 28 (ASAP) MOTUs, with most delimited MOTUs matching the morphological identification. Some species of the genera Culex, Aedes and Anopheles were assigned to the same MOTUs, especially species that are difficult to distinguish morphologically and/or represent species complexes. In total, COI barcode sequences for 34 mosquito species and ITS2 sequences for three species of the genus Anopheles were added to the mosquito sequence database for Croatia, including one individual from the Intrudens Group, which represents a new record for the Croatian mosquito fauna.ConclusionWe present the results of the first comprehensive study combining morphological and molecular identification of most mosquito species present in Croatia, including several invasive and vector species. With the exception of some closely related species, this study confirmed that DNA barcoding based on COI provides a reliable basis for the identification of mosquito species in Croatia.Graphical

Restoring forest ecosystem services through trait-based ecology

Restoration is moving towards a more mechanistic approach that emphasizes restoration of ecosystem services. Trait-based approaches provide links between species identity and ecosystem functions and have been suggested as a promising way to formally integrate ecosystem services in the design of restoration programs. While practitioners have been routinely using informal knowledge on plant traits in their practices, these approaches are underutilized as operationalization remains challenging. The goal of this paper is to provide guidance for applied scientists and restoration practitioners looking to apply a trait-based approach to restore forest ecosystems. We present a five-step framework: 1) selection of services to be restored, 2) trait selection, 3) data acquisition, 4) analytical planning, and 5) empirical testing and monitoring. We use three Canadian case studies to illustrate the applicability of our framework and the variety of ways trait-based approaches can inform restoration practices: 1) restoration of urban woodlots after an insect outbreak, 2) restoration of a smelter damaged landscape surrounding an urban area, and 3) reclamation of remote upland forests after oil and gas related disturbances. We describe the major mechanisms and traits that determine vegetation effects on ecosystem services of importance in each case study. We then discuss data availability, methodological constraints, comparability issues, analytical methods, and the importance of empirical testing and monitoring to ensure realistic prediction of service restoration. By outlining issues and offering practical information, we aim to contribute to a more robust use of traits in ecological restoration.

Phytochemical Profile of Rhizophora apiculata, Bruguiera gymnorhiza, and Bruguiera cylindrica for Wood Identification

Identification of wood species that are difficult to distinguish from their anatomical structure can be done through phytochemical (extractive substance) profiling. This research aimed to analyze the phytochemical profile as a sorter for three species of mangrove wood from Indramayu and Cilacap Regencies, Indonesia, using the liquid chromatography-mass spectrum. The phytochemical markers of taxonomic were the dominant compounds only found in one wood species. The results showed that the three types of wood are dominated by phytochemicals dissolved in ethanol. The results of LCMS analysis of the ethanol extract showed that the phytochemical markers were triterpenoid, flavonoid, and fatty acyls glycoside groups for Rhizophora apiculata, steroid and naphthalene groups for Bruguiera gymnorhiza, and alkaloid as well as fatty amide group for Bruguiera cylindrica. The dominant compounds that characterize these can be used in sorting between mangrove wood species. Keywords: characterizer, compound, mangrove, phytochemicals

Molecular and phenotypic identification of bacterial species isolated from cows with mastitis from three regions of Poland

BackgroundBovine mastitis is a widespread disease affecting dairy cattle worldwide and it generates substantial losses for dairy farmers. Mastitis may be caused by bacteria, fungi or algae. The most common species isolated from infected milk are, among others, Streptococcus spp., Escherichia coli, Staphylococcus aureus and non-aureus staphylococci and mammaliicocci. The aim of this paper is to determine the frequency of occurrence of bacterial species in milk samples from cows with mastitis from three regions of Poland: the north-east, the south-west and the south. To this end 203 milk samples taken from cows with a clinical form (CM) of mastitis (n = 100) and healthy animals (n = 103) were examined, which included culture on an appropriate medium followed by molecular detection of E. coli, S. aureus, Streptococcus agalactiae and Streptococcus uberis, as one of the most common species isolated from mastitis milk.ResultsThe results obtained indicated that S. uberis was the most commonly cultivated CM species (38%, n = 38), followed by S. aureus (22%, n = 22), E. coli (21%, n = 21) and S. agalactiae (18%, n = 18). Similar frequencies in molecular methods were obtained for S. uberis (35.1%) and S. aureus (28.0%). The variation of sensitivity of both methods may be responsible for the differences in the E. coli (41.0%, p = 0.002) and S. agalactiae (5.0%, p = 0.004) detection rates. Significant differences in composition of species between three regions of Poland were noted for E. coli incidence (p < 0.001), in both the culture and molecular methods, but data obtained by the PCR method indicated that this species was the least common in north-eastern Poland, while the culture method showed that in north-eastern Poland E. coli was the most common species. Significant differences for the molecular method were also observed for S. uberis (p < 0.001) and S. aureus (p < 0.001). Both species were most common in southern and south-western Poland.ConclusionsThe results obtained confirm the need to introduce rapid molecular tests for veterinary diagnostics, as well as providing important epidemiological data, to the best of our knowledge data on Polish cows in selected areas of Poland is lacking.

Dicranum shennongjiaense W.Z.Huang & R.L.Zhu (Dicranaceae, Bryophyta), a new species from Central China supported by morphological and molecular evidence

ABSTRACT Introduction Dicranum Hedw. is one of the most taxonomically challenging genera of mosses, having 93 accepted species worldwide. Although recent integrative taxonomic revisions have clarified the delimitation of most species within this genus, the circumscriptions of some Dicranum species remain unsolved. During our recent survey of Dicranum in China, an intriguing species with an unknown combination of morphological traits was discovered in the Shennongjia National Nature Reserve, Central China. We carried out a study to provide morphological and phylogenetic evidence with which to determine the taxonomic status of this Chinese species. Methods The phylogenetic evidence was obtained through the combined analysis of five loci (rps4–trnT, trnL–trnF, trnH–psbA, rps19–rpl2 and rpoB) and one nuclear region (nrITS1–5.8S–ITS2). Morphological characteristics were investigated by microscopic examination of specimens. Key results and conclusions A new moss species, Dicranum shennongjiaense W.Z.Huang & R.L.Zhu, is described and illustrated based on molecular and morphological evidence. This new species is characterised by its falcate leaves, rectangular and elongated laminal cells with strongly protruding upper angles on the dorsal side in the upper leaf portion, irregularly bistratose laminal cells above the midleaf, one layer of guide cells in the costa, and sharp serrations on the dorsal side of the costa in the upper leaf portion. Additionally, D. baicalense Tubanova, previously known only from Russia, is newly reported for China. A key for identification of the Chinese species of Dicranum sect. Dicranum is provided.

Ecophysiology and Seedlings Nutrient Contents of Forest Species &amp;lt;i&amp;gt;Ricinodendron heudelotii &amp;lt;/i&amp;gt;(Mull. Arg.) and &amp;lt;i&amp;gt;Cola acuminata &amp;lt;/i&amp;gt;(P. Beauv.) Influenced by Biofertilizer and Salinity

&amp;lt;i&amp;gt;Ricinodendron heudelotii&amp;lt;/i&amp;gt; and &amp;lt;i&amp;gt;Cola acuminata, &amp;lt;/i&amp;gt;are important plants species whose exploitation became abusive over the years due to the high utilization of their fruits as Non-Timber Forest Products (NTFP). They face to multiple challenges: a recalcitrance of seeds and salinity that limits regeneration. Therefore, regeneration seems an appropriate corridor for domestication with the optimization of plant mycorrhizal symbiosis otherwise called arbuscular mycorrhizal fungi (AMF). But alongside this domestication can be added constraints due to salinity of the soils in coastal region. This justify the aim of this work which was to study dynamics and evaluate the effect of salinity and mycorrhizal biofertilizers on the &amp;lt;i&amp;gt;Ricinodendron heudelotii&amp;lt;/i&amp;gt; and &amp;lt;i&amp;gt;Cola acuminata &amp;lt;/i&amp;gt;seedlings. To undergo this purpose, data were collected in two villages (Kendje and Njombeng) in Mungo division, and assay were conducted in greenhouse at the Faculty of Science, University of Douala-Cameroon. In the field, the identification of species was assessed over an area of 1600 m² as well as the circumference of the trees, the individual number of &amp;lt;i&amp;gt;Ricinodendron heudelotii&amp;lt;/i&amp;gt; and &amp;lt;i&amp;gt;Cola acuminata&amp;lt;/i&amp;gt; among other species in order to assess their maturity and rarity in the forest. The second part was carried out in the greenhouse for the purpose of germination, obtaining seedlings and evaluating the effects of arbuscular mycorrhizal fungi (&amp;lt;i&amp;gt;Gisgaspora margarita&amp;lt;/i&amp;gt;) as biofertilizers on the seedlings in saline conditions (0, 50, 100 and 200 mM of NaCl). Some parameters were determined on seedlings (plant growth, dry weight, distribution of ions in plant organs, chlorophyll and carotenoid content) over a period of twenty-six weeks. Globally &amp;lt;i&amp;gt;Cola acuminata &amp;lt;/i&amp;gt;is more present in the forest (5.88%) than &amp;lt;i&amp;gt;Ricinodendron heudelotii&amp;lt;/i&amp;gt; (1.47%) with average circumference of 105cm for both species. AMF-biofertilizer alleviates the deleterious effect of salt stress on plants growth parameters depending of concentration. Moreover, for those species, the distribution of Na&amp;lt;sup&amp;gt;+&amp;lt;/sup&amp;gt; is more accumulated in the root’s plants unlike K&amp;lt;sup&amp;gt;+&amp;lt;/sup&amp;gt; and P which are more concentrated in the leaves.

Comprehensive evaluation and application of woody plants in the green spaces of parks in saline-Alkaline areas from a low-carbon perspective: A case study of Tianjin Qiaoyuan Park.

The field of landscape architecture has placed significant emphasis on low-carbon landscapes due to the increasing challenges posed by global warming and environmental deterioration in recent years. The soil ecological conditions in saline-alkaline areas are characterized by poor quality, resulting in suboptimal growth conditions for trees. This, in turn, hampers their ability to effectively sequester carbon, thereby diminishing the potential benefits of carbon sinks. Additionally, the maintenance of tree landscapes in such areas generates more carbon emissions than does conventional green land, making it difficult to reap the benefits of tree-based carbon. A comprehensive evaluation of trees in green park spaces in saline-alkaline areas is conducted from a low-carbon perspective; by identifying the dominant tree species that are well suited to greening, we can offer a precise scientific foundation for implementing low-carbon greening initiatives in cities situated in saline-alkaline environments. Therefore, as a case study, this study investigates Tianjin Qiaoyuan Park, a typical saline park in the Bohai Bay region. The hierarchical analysis method (AHP) was used to evaluate 50 species of trees and shrubs in the park from a low-carbon perspective. The results show that the evaluation system consists of four criterion layers and 15 indicator factors. The relative weight of the criterion layer followed the order of habitat adaptability (B2) > carbon sequestration capacity (B1) > low-carbon management and conservation (B3) > landscape aesthetics (B4). The indicator layer assigned greater weight values to net assimilation (C1), saline and alkaline adaptability (C3), drought tolerance (C4), irr igation and fertilization needs (C8), growth rate (C2), and adaptability to barrenness (C5). The trees were classified into five distinct categories, with each exhibiting significant variation in terms of the strengths and weaknesses of the indicators. According to the comprehensive score, the trees were categorized into three levels. The Grade I plants exhibited the best carbon efficiency performance, comprising a total of 12 species (e.g. Sabina chinensis, Fraxinus chinensis 'Aurea' and Hibiscus syriacu), and demonstrated superior performance in all aspects. Grade II trees, consisting of 26 species (e.g Pinus tabuliformis, Paulownia fortunei, Ligustrum × vicaryi), had the second-highest comprehensive score. Moreover, Grade III trees, encompassing 12 species (e.g Acer mono, Cedrus deodara, Magnolia denudata), exhibited lower comprehensive scores. The extensive use of Grade I and II tree species is recommended in the implementation of low-carbon greening projects in the Bohai Bay region, while Grade III tree species should be judiciously utilized. The findings of this research can serve as a valuable resource for the scientific identification of tree species that are suitable for urban park green spaces in the Bohai Bay region, which is characterized by predominantly saline and alkaline soil. Additionally, the development of an evaluation system can guide the selection of low-carbon tree species when evaluating other types of saline and alkaline lands.

Towards a species-level phylogeny for Neotropical Myrtaceae: Notes on topology and resources for future studies.

Increasingly complete phylogenies underpin studies in systematics, ecology, and evolution. Myrteae (Myrtaceae), with ~2700 species, is a key component of the exceptionally diverse Neotropical flora, but given its complicated taxonomy, automated assembling of molecular supermatrices from public databases often lead to unreliable topologies due to poor species identification. Here, we build a taxonomically verified molecular supermatrix of Neotropical Myrteae by assembling 3909 published and 1004 unpublished sequences from two nuclear and seven plastid molecular markers. We infer a time-calibrated phylogenetic tree that covers 712 species of Myrteae (~28% of the total diversity in the clade) and evaluate geographic and taxonomic gaps in sampling. The tree inferred from the fully concatenated matrix mostly reflects the topology of the plastid data set and there is a moderate to strong incongruence between trees inferred from nuclear and plastid partitions. Large, species-rich genera are still the poorest sampled within the group. Eastern South America is the best-represented area in proportion to its species diversity, while Western Amazon, Mesoamerica, and the Caribbean are the least represented. We provide a time-calibrated tree that can be more reliably used to address finer-scale eco-evolutionary questions that involve this group in the Neotropics. Gaps to be filled by future studies include improving representation of taxa and areas that remain poorly sampled, investigating causes of conflict between nuclear and plastid partitions, and the role of hybridization and incomplete lineage sorting in relationships that are poorly supported.

Diplostomum cf. vanelli Yamaguti, 1935 (Trematoda: Diplostomidae Poirier, 1886): Morpho-Molecular Data and Life Cycle

Furcocercariae, of the trematodes from the family Diplostomidae, were found in freshwater snails—Radix auricularia, which were collected in a reservoir located on Popov Island (Peter the Great Bay, Sea of Japan). The life cycle was experimentally reproduced for the first time, while morphometric data for the development stages were studied and described for the newly discovered trematode. Moreover, molecular data for nuclear and mitochondrial markers were also obtained. It was determined that the morphometric characteristics of the trematode coincided with the species Diplostomum cf. vanelli, the molecular data analysis validates the species independence. Furthermore, the study highlights the issue of species identification in the Diplostomum genus.

Double-Tube Multiplex TaqMan Real-Time PCR for the Detection of Eight Animal-Derived Dairy Ingredients.

Milk and dairy products represent important sources of nutrition in our daily lives. The identification of species within dairy products holds importance for monitoring food adulteration and ensuring traceability. This study presented a method that integrated double-tube and duplex real-time polymerase chain reaction (PCR) with multiplex TaqMan probes to enable the high-throughput detection of animal-derived ingredients in milk and dairy products. The detection system utilized one pair of universal primers, two pairs of specific primers, and eight animal-derived specific probes for cow, buffalo, goat, sheep, camel, yak, horse, and donkey. These components were optimized within a double-tube and four-probe PCR multiplex system. The developed double-tube detection system could simultaneously identify the above eight targets with a detection limit of 10-0.1 pg/μL. Validation using simulated adulterated milk samples demonstrated a detection limit of 0.1%. The primary advantage of this method lies in the simplification of the multiplex quantitative real-time PCR (qPCR) system through the use of universal primers. This method provides an efficient approach for detecting ingredients in dairy products, providing powerful technical support for market supervision.

Interspecific and intraspecific difference in egg size of two mackerel (Scomber spp.) species in relation to sea surface temperature in the western North Pacific: A new approach to species identification

AbstractChub mackerel (Scomber japonicus, Scombridae) and blue mackerel (Scomber australasicus) are two important fishery resources in the western North Pacific that spawn eggs during the same season. Although estimating the total egg production (TEP) is important for evaluating the spawning stock biomass of mackerel species, it is difficult to accurately identify formalin‐preserved eggs collected during ichthyoplankton surveys. Hence, a new identification criterion that incorporates the effects of water temperature on egg size was developed in this study. The diameter of 37,304 mackerel eggs collected over 16 years (2006–2021) was measured, and frequency distributions of egg size across sea surface temperature (SST) ranges at 1°C interval were constructed. The frequency distributions were classified into two groups using a Gaussian mixture model; based on the results of DNA analysis, the small group was chub mackerel, while the large group was blue mackerel. The SST at the sampling stations and the mean egg size of both groups were negatively correlated. The new identification criterion, incorporating the relationship between SST and egg size, provided reasonable estimates of the TEP of the two mackerel species compared with the conventional criterion. The new species identification approach is applicable to other fish taxa in the western North Pacific.

A review of the earthworm Amynthas masatakae (Beddard, 1892) (Clitellata, Megascolecidae), with designation of two new synonyms

Correct and timely identification of an invasive species during quarantine or at an early stage of invasion before establishment or spread is critical for preventing biological invasions. However, taxonomic confusion of potential invasive earthworm species caused by incorrect taxonomic treatment or reckless taxonomic work has made it difficult to properly recognize potential invasion threats. Through analyzing publicly available DNA sequences of the mitochondrial cytochrome c oxidase subunit I (COI) gene, we confirmed the validity of the specific status of Amynthas masatakae (Beddard, 1892), a peregrine earthworm species in East Asia with the potential to spread to other regions of the world, and designated two new synonyms of A. masatakae: Amynthas tralfamadore Blakemore, 2012 syn. nov. and Amynthas scaberulus Sun and Jiang, 2021 syn. nov. Additionally, the name A. triastriatus usualis Dong, Jiang, Yuan, Zhao and Qiu, 2020 is nomenclaturally unavailable since it was published in an electronic journal without ZooBank registration and an explicit statement establishing a new nominal taxon. Specimens described under this unavailable name actually belong to A. masatakae. Inadequate literature review and erroneous species identities associated with sequences in GenBank have caused even more problems in the already confusing earthworm taxonomy.

Diversity of wasps (Hymenoptera) in alfalfa (Medicago sativa L.) farms in Basrah Governorate, Southern Iraq

Studies on the diversity of parasitoid wasps in agroecosystems exemplify the first stage of recognizing the best species to be used in biological control programs. There is an increased effort to recognize the diversity of pests in agroecosystems, but information on agricultural environments in Iraq is still unknown. This study is interested in the diversity of wasps in a cultivated area in Basrah governorate and the identification of dominant species for potential application in biological control studies. Samples were collected from alfalfa farms between January and December 2020 using two insect collection methods: sweep nets and yellow pan traps in four stations in Basrah governorate. This paper confirms that there is a high diversity of wasp species in agricultural environments. During this study, 18 wasp species were recorded for the first time in Iraq. Gronotoma micromorpha recorded the highest annual relative abundance value of 26.5%, while Chalcis biguttata recorded the lowest relative abundance of 0.89% in most agricultural environments. Numerous studies on G. micromorpha indicate that it is a parasitoid of Liriomyza species (Diptera). Thus, this species may be an important agent in the biological control of this pest.